• Create a conda environment with the Python ISA-API

    The ISA (Investigation, Study, Assay) metadata framework (https://isa-tools.org/) can be used to describe experimental metadata readable for both humans and machines (using ontologies). ISA-Tab and ISA-JSON files can be created, read and edited using

  • Install R/Bioconductor packages in RStudio using renv package manager (Windows)

    The `renv` package (https://rstudio.github.io/renv/articles/renv.html) allows project-wise package management in R. This is useful when working on multiple R projects with different dependencies, and sharing these environment across users or VMs. In order

  • Does DRE keep running when computer shuts down or internet connection is disrupted?

    I am currently running an analysis on DRE and it will probably continue to run for another 14 hours.  If my connection with the virtual desktop is disrupted because the internet stops or I shut down my laptop, will the VM continue or will the analysis

  • Announcements

  • Azure Storage Explorer available on Radboudumc PCs and VMWare

    Azure Storage Explorer has been made available within the Radboudumc Werkplek environment. The program can be requested via the ICT self service portal. Azure Storage Explorer can be used to transfer large amounts of data to your workspace. By having

  • Remapping Datasets

    Background I've been involved in COVID-19 related data gathering. Data was capured in CASTOR, but needed to be remapped to WHO standard. This meant mapping variables, remapping values (e.g. NO: 2 in the one NO: 0 in the other), adding missing units, substituting

  • Improved / New Features

    New & Improved Features TAB: Virtual Machines The VM can be quickly accessed in portal.azure.com. For trouble shooting, looking at performance metrics, etc. For example: when your VM is stuck in Unknown status, you can quickly access your VM in the Aure

  • Collaborate!

    This forum is to have general discussions, announcements, a place to ask questions, to an answer questions. Give your opinion and ideas. To keep track of certain issues. We love to learn from your input and do hope we can build together a nice eco-system. 

  • Important announcements

    This forum is reserved for announcing issues, new features, etc. Subscribing to this forum will keep you informed. Please only post reactions or add topics to this forum if you believe it is of utmost important for everybody. Their are other forums that