General
Installing Mathworks Matlab on Ubuntu
The "normal" matlab install doesn't work on the current anDREa Ubuntu image because the home folder uses special characters (@), unzip is not installed and mathworks.com is blocked: This is a workaround: Requirements: Advanced Member in anDREa A ...
GraphPad Prism
GraphPad Prism is a software tool used for analyzing and graphing scientific data. It's popular among researchers, especially in the fields of biology and medicine, for its ability to handle complex statistical analyses and create understandable ...
Fiji
Fiji is an image processing package — a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis. Like ImageJ itself, Fiji is an open source project hosted on GitHub, developed and written by the ...
RDP on Chromebook
myDRE uses RDP as a means to access the Windows Virtual Machines (VMs) in a Workspace. Linux VMs can only be accessed directly using Bastion or through Windows VMs due to security and audit requirements. Set up 1. Go to Play store in your Chromebook ...
Set up Linux on your Chromebook
Linux is a feature that lets you develop software using your Chromebook. You can install Linux command line tools, code editors, and IDEs (integrated development environments) on your Chromebook. Turn on Linux Linux is off by default. You can turn it ...
Shiny Server in a myDRE Workspace
Version = 2023-02-02 This instruction is used to get Shiny Server up and running in a Workspace. For your actual workloads you might need other size VMs. Also there is much more to be configured, but being able to get Shiny up and running is a good ...
NVIDIA-docker
This article describes how to install NVIDIA-docker on a Linux VM in two parts. kudos to Bob van Dijk - Amsterdam UMC Download and ingress the attachment for easy copy/paste. Part 1: install and start the latest NVIDIA drivers for your GPU card Open ...
CEDAR
CEDAR Home page CEDAR https://more.metadatacenter.org/tools-training/orientation CEDAR APIs https://more.metadatacenter.org/tools-training/cedar-api CEDAR API and Python Prerequisites: Create file called: secret.py Add the following line of ...
Oxford NCOVID-19 RedCap Access
Create external rule Rule IP Port Reason REDCapOxoford443 163.1.69.16 443 Accessing REDCap Oxford from within Workspace Within VM Open the Chrome browser and go to: https://ncov.medsci.ox.ac.uk/ Sign up must be done outside the Workspace When ...
Castor R-Package
Prerequisites DRE: Owner access to workspace, to install R / RStudio / Rtools in a virtual machine External access to CRAN in the workspace where you want to export the data to (open up port rule) External access to Castor in the workspace where you ...
Using Castor in Python
Introduction anDREa would like to thank Reinier van Linschoten for bringing this package and description to our attention. This is a Python package for interacting with the API of Castor Electronic Data Capture (EDC). The package contains functions ...
CBS OpenData
CBS OpenData & Python & R / RStudio Update: 2024-02-19 Domain to allow list beta-odata4.cbs.nl Instructions how to use the API https://github.com/statistiekcbs/CBS-Open-Data-v4/tree/master basic.py tested working
Self-service installing apps
Only Owners can install software on VMs in their workspaces. Dependent on the institution under which your workspace falls, you may have software available by default, through an application manager, and on-request by your institutions (Core) Support ...
Software Licenses
License is the responsibility of the Workspace Accountable As a Workspace Accountable, you are responsible for the licenses in your Workspace. Make sure that members in the role Privileged Member and Advanced Member, those who can install ...
Castor
Setting up for Direct Access The method for accessing websites and internet-dependent services detailed on this page is outdated. We recommend to use domain-allowlisting, which is a self-service feature in the myDRE portal. Please see Domains to be ...
Python, Anaconda and JupyterLab
With domain allowlisting now being a self-service feature, this is the preferred option. For proxy settings in Anaconda in combination with domain allowlisting, please follow this article: ...
Software support
For all AUMC, EMC and UMCU workspaces: access to software using the Radboudumc license servers (e.g. Stata, Matlab, SPSS, Atlas.ti or anything that needs a license and is installed from the Install DRE applications manager) has been revoked from ...
Popular Articles
Activating your new @mydre.org account
Before you can access your DRE workspace(s) at mydre.org, you need to activate your @mydre.org account. Below, we explain the steps in this activation process, along with screenshots for illustration. Prerequisite: your new @mydre.org username, which ...
R and RStudio using External Access rules
This method of downloading R packages is outdated! This article will not be updated any longer. IP addresses are often subject to change. Therefore, the domain allowlisting feature has been introduced and it is self-service for Accountable and ...
Atlas.ti
Older versions of Atlas.ti will show the option to validate your license offline. Unfortunately, this procedure no longer works. You can still use Atlas.ti by allowlisting the domain atlasti.com, as explained under Step 2 in Validating your Atlas.ti ...
Python, Anaconda and JupyterLab
With domain allowlisting now being a self-service feature, this is the preferred option. For proxy settings in Anaconda in combination with domain allowlisting, please follow this article: ...
Proxy configurations Anaconda
First version: 2022-10-31 Latest version: 2023-11-16 Last change(s): Clarification in the introduction; clarifying instructions; added screenshots. This is a community effort. The article was created by the anDREa Support Team in their spare time. If ...